PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_39923

Common Name

KK1_037271

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

SRS

Protein Properties

Length: 137aa MW: 14374.8 Da PI: 7.5046

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_39923	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	76.5	7.4e-24	12	93	85	154
DUF702 85 alsstklssaeskkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 a+s++++s+a+++k+++ + lP++v+++avfrc rvs++ ge+e+aY ++v+i+GhvfkG+Lyd+G+++ C.cajan_39923 12 ATSHSSTSNATPTKSFSLDTsscqqdagfkqcLPRHVQAPAVFRCHRVSAIGSGEDEFAYLATVHISGHVFKGFLYDHGPDA 93 33333444443333333222335555566668***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-22	13	92	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	1.5E-22	44	91	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MRILGSSKNV AATSHSSTSN ATPTKSFSLD TSSCQQDAGF KQCLPRHVQA PAVFRCHRVS 60 AIGSGEDEFA YLATVHISGH VFKGFLYDHG PDARNDVLSV SELQLGNNGS GKNNNNNNGE 120 CSSAIGVPTS AYPASVC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_39923

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	4e-99	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020240275.1	1e-93	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	2e-25	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A151RFT5	2e-96	A0A151RFT5_CAJCA; Uncharacterized protein
STRING	GLYMA15G37600.1	4e-77	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	3e-20	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]