PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_39985
Common NameKK1_042921
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LSD
Protein Properties Length: 198aa    MW: 21362.3 Da    PI: 8.2317
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_39985genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.71.6e-122852125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   C+gCr+lL +P GA+sV+Ca+C++V
  C.cajan_39985 28 CSGCRNLLVFPVGATSVCCAVCNAV 52
                   ************************9 PP
2zf-LSD146.27.7e-156791125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   CggC+tlL+Y rGA+sV+C++C+tV
  C.cajan_39985 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                   ************************9 PP
3zf-LSD141.22.7e-13134158125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+Cr lL+Y +GA+sV+Ca+C++V
  C.cajan_39985 134 CGNCRMLLMYQYGARSVKCAVCNFV 158
                    ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.7E-122555IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-92852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.4E-146493IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.5E-12131161IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-12134158IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYTPPAN GAQSQLVCSG CRNLLVFPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEDIKT CFFCELNQYD LSPYFVGKHQ  120
MCIVTANQVA HVNCGNCRML LMYQYGARSV KCAVCNFVTS VGVSIISCFL LRVCLDKLVN  180
KQLIGKENKR IKGIEFLK
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_39985
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904151e-115BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA.
GenBankBT1369451e-115BT136945.1 Lotus japonicus clone JCVI-FLLj-13N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593714.15e-82protein LOL1
RefseqXP_021593716.15e-82protein LOL1
RefseqXP_021593717.15e-82protein LOL1
RefseqXP_021593718.15e-82protein LOL1
SwissprotQ93ZB12e-69LOL1_ARATH; Protein LOL1
TrEMBLA0A151R0861e-142A0A151R086_CAJCA; Uncharacterized protein
STRINGcassava4.1_018557m2e-81(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-55lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]