PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40030
Common NameKK1_040170
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 425aa    MW: 47163 Da    PI: 5.9615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40030genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-1632122199
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                    ffkv   +    +  l++p  f  ++   ++   +k+++l+d+sg++W+v++  +   g++v+++GW+ F  ++gLk+g f+vF ++++  f   v
  C.cajan_40030  32 FFKVI--AKQEHLTTLYIPPAFS-SIvsHLV---NKKVILNDSSGKQWNVEV--SEVNGSFVFEEGWNTFSLDHGLKVGYFLVFNYIKDLHF--DV 117
                    67777..444445569******7.5544344...468***************..999999**************************987666..88 PP

                    EEE-S CS
             B3  95 kvfrk 99 
                    k++++
  C.cajan_40030 118 KIYDT 122
                    88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-2226125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2127125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.23930123IPR003340B3 DNA binding domain
CDDcd100174.21E-1731121No hitNo description
PfamPF023621.4E-1432121IPR003340B3 DNA binding domain
SMARTSM010192.6E-1132123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGSKGHPVCA VCTNNCLLFH RPKQTPPSPT CFFKVIAKQE HLTTLYIPPA FSSIVSHLVN  60
KKVILNDSSG KQWNVEVSEV NGSFVFEEGW NTFSLDHGLK VGYFLVFNYI KDLHFDVKIY  120
DTSACEKLDF SKKRNQKKRS RGKSGSPVKD GKLVRQGPNA VVVSQLHVPK MQNQRSKVDS  180
VVPQNSKESG QLMCISEHCE DPYYSTSLEF DQSHGVDGTT RFANGDSKVP DVDCGTHIYQ  240
NDAIVCSKNP MFEVGMGAYL DISELEMSGG NTSLGEANKS TYDKTSTLEL EANKGIKAIM  300
YNREAQECQI AESLESDQAA MSKEEHDLHI GGFHNTQQKS NGISNYLDAE LVNMITGEMK  360
KVPVDMAPEL GSSMDELNVT GLPEETKGEL GHSSDMFNQH NESHFKTALT FSCVVPNDDV  420
YLVRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203824.10.0B3 domain-containing protein Os01g0905400
TrEMBLA0A151R7I10.0A0A151R7I1_CAJCA; B3 domain-containing protein Os02g0598200 family
STRINGGLYMA04G36750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-12B3 family protein