PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_40410

Common Name

KK1_043325

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YC

Protein Properties

Length: 279aa MW: 31357.7 Da PI: 5.0744

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_40410	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.3	4.1e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + +t++ ++++v+ ++fdfl div + C.cajan_40410 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.1E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	7.11E-20	4	88	IPR009072	Histone-fold
Pfam	PF00808	2.3E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLRRGAK 60 TMNAFHLKQC VQTFNVFDFL KDIVSKVPDL GGSVATGDDH TVTKRRKVAE DDDNDSDEES 120 KRNKKPEAGH SSGRGRGRGR GRGRGRGVRT VDQETSPRAK SEDDSNVLKQ NEKHTQSNES 180 MENVSDPEDV KQTSLDSKPA KVSIRNFDLN MNPDENTDSS ASPTPVATSS SAKSMSEEKH 240 DEYPGWSWSD MEKMSIDPTQ LANINRRIDE DEEDYDEEM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	145	RGRGRGRGRGR
2	137	146	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_40410

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020206155.1	0.0	dr1-associated corepressor
TrEMBL	A0A151QZ88	0.0	A0A151QZ88_CAJCA; Dr1-associated corepressor
STRING	GLYMA02G44500.2	1e-149	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-58	nuclear factor Y, subunit C11