PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40483
Common NameKK1_043229
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARR-B
Protein Properties Length: 559aa    MW: 62280.6 Da    PI: 6.5883
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40483genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.85.1e-28319373156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  C.cajan_40483 319 KMKVDWTPELHKKFVKAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 373
                    5689*****************.********************************96 PP
2Response_reg27.31.8e-10201261109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                    vl+ + + + +  +r  le  +y +v ++ d  eal  +  +   +++ ++ ++ +    G+++l++     ++lp i+ + +   +++ +++ +G
  C.cajan_40483  20 VLLLEGDSVSAAEVRAKLEAMDY-NVSTFCDENEALSAISSRSesFHIAIVEVSSSSnQGGFKFLENA----KDLPTIMTSNNHCLNTMMKCIALG 110
                    567777777888899999*****.***************665556********999878889888653....4799999999999*********** PP

                    ESEEEESS--HHHHHH CS
   Response_reg  94 akdflsKpfdpeelvk 109
                    a +flsKp ++++l++
  C.cajan_40483 111 AVEFLSKPLSEDKLRN 126
                    *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.98E-1516135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.7E-1616139No hitNo description
SMARTSM004484.4E-418128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.57719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.32E-921131No hitNo description
Gene3DG3DSA:1.10.10.601.8E-27316376IPR009057Homeodomain-like
PROSITE profilePS5129415.341316375IPR017930Myb domain
SuperFamilySSF466892.42E-18317376IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-25319374IPR006447Myb domain, plants
PfamPF002494.8E-8322371IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MVCTANDLQE WKDFPKGLKV LLLEGDSVSA AEVRAKLEAM DYNVSTFCDE NEALSAISSR  60
SESFHIAIVE VSSSSNQGGF KFLENAKDLP TIMTSNNHCL NTMMKCIALG AVEFLSKPLS  120
EDKLRNIWQH VVHKAFSAGA SVLCESLKPV KESVVSMLQL KTDNEQHESG VSIDIEKVYR  180
FTDNDHEQSP GNDKYPAPST PQLRQGTRLL DDGDCQEQTN CSTEKEKKEC GEHDGESKSV  240
ETTCGNLNAE TESTPQQRNS ETTLAKEEVD LVDATKGETV ASLHAQKRKV LSNTDRNIKS  300
PNKAGVHSDA CEIRTNRKKM KVDWTPELHK KFVKAVEQLG IDQAIPSRIL ELMKVEGLTR  360
HNVASHLQKY RMHKRQILPK EEDRKWLNPR EKSYCVQRPI MAFPPYHSNH TLPLAPVYPM  420
WGQSGNQTAG MQIWGSPGYP MWQPTAESWH WKPFPGVHAD AWGCPVLPVP PPQAPCFPYS  480
QNMPALLNAD MVNHTFSMSQ SSFEHHPAEE VVDKVVKEAI SKPWLPLPLG LKPPSTDSVL  540
VELSRQGICS IPPKGSNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-17324373655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40483
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-128AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206070.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-145APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A151QZG90.0A0A151QZG9_CAJCA; Two-component response regulator-like APRR2
STRINGGLYMA05G06070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-136ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]