PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40512
Common NameKK1_038262
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 168aa    MW: 19499.4 Da    PI: 10.3175
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40512genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.6e-281262151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   k+ienk+nrqvtfskRr+g+ KKA+E+SvLCda+va+i+f s+gkl+++ss
  C.cajan_40512 12 KQIENKINRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNSKGKLFDFSS 62
                   78***********************************************96 PP
2K-box80.73.4e-27871601184
          K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                    ++ + +++ +  kL  ++e L+r++R+++G+dL++Lsl+eLq+Le+qL++++k+iR++Kn+++ e+i++lqkk 
  C.cajan_40512  87 DESQGNWSLQCFKLTGKVEVLERNLRNFVGQDLDPLSLRELQSLEHQLDTAIKRIRTRKNQVMNESISYLQKKV 160
                    567789******************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.782464IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-35463IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-31581IPR002100Transcription factor, MADS-box
CDDcd002652.64E-38578No hitNo description
PROSITE patternPS003500660IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-29626IPR002100Transcription factor, MADS-box
PfamPF003195.1E-241460IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-292641IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-294162IPR002100Transcription factor, MADS-box
PfamPF014865.1E-2288160IPR002487Transcription factor, K-box
PROSITE profilePS5129712.66590168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
LLKMGRGRVQ LKQIENKINR QVTFSKRRTG LRKKAHEISV LCDAQVALIV FNSKGKLFDF  60
SSESSMENVL ERYERHAHLG QLVGDGDESQ GNWSLQCFKL TGKVEVLERN LRNFVGQDLD  120
PLSLRELQSL EHQLDTAIKR IRTRKNQVMN ESISYLQKKV TGYYWIFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-20477173MEF2 CHIMERA
6byy_B2e-20477173MEF2 CHIMERA
6byy_C2e-20477173MEF2 CHIMERA
6byy_D2e-20477173MEF2 CHIMERA
6bz1_A2e-20477173MEF2 CHIMERA
6bz1_B2e-20477173MEF2 CHIMERA
6bz1_C2e-20477173MEF2 CHIMERA
6bz1_D2e-20477173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40512
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150447e-52AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202293.11e-112truncated transcription factor CAULIFLOWER A isoform X1
SwissprotD7SMN66e-78FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A151RD701e-120A0A151RD70_CAJCA; Agamous-like MADS-box protein AGL8 (Fragment)
STRINGGLYMA13G06811.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-74AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]