PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40945
Common NameKK1_040295
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 623aa    MW: 70505.8 Da    PI: 6.4182
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40945genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS52.68.6e-17285354170
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 
                    l++lL+ cA+av+++d+++a++lL++++++++p gd +qRla+ f+ +L+arla+ +s++yk l + +ts
  C.cajan_40945 285 LRTLLVLCAQAVAADDHRNANELLKQIRQHSTPFGDGNQRLAHIFADGLEARLAGIGSQIYKGLVSIRTS 354
                    5789**********************************************************99665554 PP
2GRAS274.63.2e-84355621109374
           GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
                    +  vH+iDf+i +G+QWp+++q L+ R++gpp+lRiTg++ p++g   +e++ etg+rLa +Ae+++vpfe+++ +ak++++++leeL+++++E l
  C.cajan_40945 355 AANVHVIDFGILYGFQWPTFIQRLSWRTGGPPKLRITGIDFPQPGfrPAERVIETGRRLAAYAESFNVPFEYKA-IAKKWDTIQLEELEIDRDEFL 449
                    478*****************************************9*****************************.7******************** PP

           GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                    +V + ++ ++lldesv +es+r+++L+l+++++Pk++++   +   n++ F++rf eal +ys+lfd+le+ +pre+ er+ +E+e++gre+ nv+
  C.cajan_40945 450 VVTCLYRGKNLLDESVVVESPRNNFLSLIRKINPKLFIHGIMNGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGREALNVI 545
                    ************************************************************************************************ PP

           GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    aceg+er+er e++++W++r+ +aGF + +++++++k a   +r  + + + ++e+s++l++gWk+r ++++S+W+
  C.cajan_40945 546 ACEGSERVERPESYKQWQARILRAGFLQQSFDHNTVKMAMEKVRCSYHKDFLIDEDSQWLLQGWKGRIIYALSCWK 621
                    ********************************************999888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.948259601IPR005202Transcription factor GRAS
PfamPF035143.0E-14285354IPR005202Transcription factor GRAS
PfamPF035141.1E-81355621IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MTMNPHLMGF SGSTNEVRLG NQSLPTLQNQ GFGTGPRFEN LFFDRSRKFD YLQSDPNTMP  60
ANTPSSSTVT HEEHSPEDCD FSDAVLSYIN QILMEEDMED KTCMLQDSLD IQAAEKSFYE  120
VLGEKYPPSP RHPSLINPND GVGGCDFNGD YDNCPDTNGD LMSIFTNHFL PPNTVKVEKK  180
EKEEGGCVVG GSKGRKHPQM EETDAEENRS SKQAAIFPEP TLRSDMADII LLHSTGDGKE  240
HFVARREALQ NKTNKGMLPK GQSKASSNGK GRSKKQGGKK EVVDLRTLLV LCAQAVAADD  300
HRNANELLKQ IRQHSTPFGD GNQRLAHIFA DGLEARLAGI GSQIYKGLVS IRTSAANVHV  360
IDFGILYGFQ WPTFIQRLSW RTGGPPKLRI TGIDFPQPGF RPAERVIETG RRLAAYAESF  420
NVPFEYKAIA KKWDTIQLEE LEIDRDEFLV VTCLYRGKNL LDESVVVESP RNNFLSLIRK  480
INPKLFIHGI MNGAFNAPFF VTRFREALFH YSSLFDMLET IVPREDWERM LIEKEIFGRE  540
ALNVIACEGS ERVERPESYK QWQARILRAG FLQQSFDHNT VKMAMEKVRC SYHKDFLIDE  600
DSQWLLQGWK GRIIYALSCW KPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3729262226380Protein SCARECROW
5b3h_A1e-3729262225379Protein SCARECROW
5b3h_D1e-3729262225379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2361700.0AC236170.2 Glycine max clone GM_WBb0073J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522103.20.0scarecrow-like protein 9
RefseqXP_028224607.10.0scarecrow-like protein 9
RefseqXP_028224608.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A151R7570.0A0A151R757_CAJCA; Scarecrow-like protein 9
STRINGGLYMA03G10320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein