PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_41281

Common Name

KK1_039408

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

HD-ZIP

Protein Properties

Length: 226aa MW: 25821.9 Da PI: 6.701

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_41281	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	21	74	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t++q+ +Le++F++n+++ e++ +LA++lg++ rqV +W+qN+Ra++k C.cajan_41281 21 NKKRLTEDQVAILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWK 74 56789************************************************9 PP
2	HD-ZIP_I/II	110.8	9.3e-36	21	112	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qv++LE++F ++ kLepe+K +la++Lg+ prqva+W+qn+RAR+kt++lE+d+ +L+++++++++e+++Le++ve+L+ elk+ C.cajan_41281 21 NKKRLTEDQVAILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQNLEVDHGVLQAKLENVMAEKKQLERDVERLKVELKK 112 79*************9999****************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.38E-18	13	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.115	16	76	IPR001356	Homeobox domain
SMART	SM00389	2.2E-17	18	80	IPR001356	Homeobox domain
CDD	cd00086	5.93E-16	19	77	No hit	No description
Pfam	PF00046	4.7E-17	21	74	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-18	23	80	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	51	74	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGDLKFSFKT QDHVHQRAKH NKKRLTEDQV AILEKCFASN MKLEPEQKFH LANQLGVPPR 60 QVAIWYQNKR ARWKTQNLEV DHGVLQAKLE NVMAEKKQLE RDVERLKVEL KKAQEMLLIG 120 NAKGGDCSLV CKNRTHYQED LQQLTHFIQS SELDPFDGAD HSNTNNNGSC EFSTSFEEGG 180 SSGVLDDGTH HHHECWQSGE VMQAEELYAY FMGANFGSGL LHEKRA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_41281

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029125164.1	1e-170	homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A151R9X7	1e-169	A0A151R9X7_CAJCA; Homeobox-leucine zipper protein ATHB-52
STRING	GLYMA12G18720.1	1e-100	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-34	homeobox protein 52