PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_41592

Common Name

KK1_044148

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

WRKY

Protein Properties

Length: 162aa MW: 18760.3 Da PI: 5.6501

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_41592	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.6	2.2e-32	101	159	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+ gCpvkk+ver+++dp++v++tYeg+H+h+ C.cajan_41592 101 LDDGYRWRKYGKKMVKNSPNPRNYYRCSADGCPVKKRVERDKDDPRYVITTYEGNHTHP 159 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.8E-34	87	160	IPR003657	WRKY domain
SuperFamily	SSF118290	7.98E-29	94	159	IPR003657	WRKY domain
PROSITE profile	PS50811	31.422	96	161	IPR003657	WRKY domain
SMART	SM00774	1.1E-37	101	160	IPR003657	WRKY domain
Pfam	PF03106	3.7E-26	102	159	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MTDKNPKPPP DTPDSDDFTN QWPFELSDEY LNFDDHQWMR DDLHESFASV NVSNQSHQAS 60 NVGDFGGSSQ FEGSSISGGR ERREDVRERV AFKTRSEVEV LDDGYRWRKY GKKMVKNSPN 120 PRNYYRCSAD GCPVKKRVER DKDDPRYVIT TYEGNHTHPS SC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	91	158	7	74	Probable WRKY transcription factor 4
2lex_A	6e-26	91	158	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_41592

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	3e-35	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020206759.1	1e-119	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	2e-42	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A151QWZ9	1e-118	A0A151QWZ9_CAJCA; Putative WRKY transcription factor 50
STRING	GLYMA17G34210.2	1e-77	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-42	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]