PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_42380

Common Name

KK1_041148

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YB

Protein Properties

Length: 180aa MW: 19883.7 Da PI: 6.4984

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_42380	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	132.1	1.8e-41	1	87	8	94
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +P++n++rim+kvlP +ak++++aket+q cvsefi+f+tsea+++cq+e+r+ ++++d+lwa+ tlGf++yv pl +lk+yr+ e C.cajan_42380 1 MPVTNLVRIMRKVLPPQAKVAEQAKETMQVCVSEFIGFITSEANERCQKEHRRIVTAEDILWAMDTLGFDNYVGPLVSFLKRYRQSE 87 7***********************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.3E-36	1	87	IPR009072	Histone-fold
SuperFamily	SSF47113	1.93E-28	1	87	IPR009072	Histone-fold
Pfam	PF00808	9.7E-21	1	64	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.8E-12	28	46	No hit	No description
PRINTS	PR00615	2.8E-12	47	65	No hit	No description
PRINTS	PR00615	2.8E-12	66	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MPVTNLVRIM RKVLPPQAKV AEQAKETMQV CVSEFIGFIT SEANERCQKE HRRIVTAEDI 60 LWAMDTLGFD NYVGPLVSFL KRYRQSEVPN LGGRGRVPLP QVVGTYPIIS SSSSPSPSPS 120 PSLLSPQYMM ACYGPNFPPS QNWCQGMFDS SGMCEFYDDA SGGSGNVVSD FDPLNIHKRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-37	1	85	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_42380

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029125395.1	1e-133	nuclear transcription factor Y subunit B-9
TrEMBL	A0A151R545	1e-131	A0A151R545_CAJCA; Nuclear transcription factor Y subunit B-9

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2728	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	1e-40	NF-YB family protein