PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_42478
Common NameKK1_045375
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 201aa    MW: 22992.6 Da    PI: 8.2142
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_42478genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-162366146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+ T +E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
    C.cajan_42478 23 RGNITLQEQLLILDLHSRWGNR-WSKIAEHLP-GRTDNEIKNYWRT 66
                     7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.105117IPR017930Myb domain
SuperFamilySSF466892.3E-19373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-10329IPR009057Homeodomain-like
PROSITE profilePS5129422.8721872IPR017930Myb domain
SMARTSM007171.1E-132270IPR001005SANT/Myb domain
PfamPF002491.5E-142366IPR001005SANT/Myb domain
CDDcd001675.94E-112766No hitNo description
Gene3DG3DSA:1.10.10.606.9E-183067IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
SLKRTGKSCR LRWLNYLRPN VRRGNITLQE QLLILDLHSR WGNRWSKIAE HLPGRTDNEI  60
KNYWRTRVVK QAKQLKCDVN SKQFRDTLRF VWMPRMLERI QAQASSNHAQ TTLNDTAQAH  120
SEPCGATNTG LFSEASSAIE LHAPSFSDSS ACYNLRSCSA EEGSSSNLYS YSEIPENGFG  180
GADLWTDENI YFLQQQLADD F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-154643797MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-1546460120MYB TRANSFORMING PROTEIN
1mse_C1e-154643797C-Myb DNA-Binding Domain
1msf_C1e-154643797C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_42478
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973791e-108BT097379.1 Soybean clone JCVI-FLGm-16I17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207547.11e-149transcription factor MYB2
TrEMBLA0A151QTT91e-149A0A151QTT9_CAJCA; Transcription factor MYB21 (Fragment)
STRINGXP_007163206.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-66myb domain protein 2