PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_42480
Common NameKK1_045379
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 220aa    MW: 25382.7 Da    PI: 9.6955
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_42480genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.7e-191765148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     +g+W+ eEd +lv++v+ +G g+W++ ar+ g ++R++k+c++rw++yl
    C.cajan_42480 17 KGPWSVEEDTILVNYVATHGHGRWNSLARCAGrLKRSGKSCRLRWLNYL 65
                     79*********************************************97 PP
2Myb_DNA-binding48.91.5e-1571114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+  ++d++ ++G++ W++Iar+++ gRt++++k++w++
    C.cajan_42480  71 RGNITLQEQITILDLHSRWGNR-WSKIARHLP-GRTDNEIKNYWRT 114
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6191265IPR017930Myb domain
SuperFamilySSF466892.66E-2914112IPR009057Homeodomain-like
SMARTSM007171.9E-151667IPR001005SANT/Myb domain
PfamPF002499.5E-171765IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-221872IPR009057Homeodomain-like
CDDcd001674.32E-121965No hitNo description
PROSITE profilePS5129422.36366120IPR017930Myb domain
SMARTSM007173.8E-1370118IPR001005SANT/Myb domain
PfamPF002491.8E-1371114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2173118IPR009057Homeodomain-like
CDDcd001676.34E-1075114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDVKVKKTQQ SEEDIRKGPW SVEEDTILVN YVATHGHGRW NSLARCAGRL KRSGKSCRLR  60
WLNYLRPDVR RGNITLQEQI TILDLHSRWG NRWSKIARHL PGRTDNEIKN YWRTRVIKQA  120
KNLNCDVDSK QFKDVLRYDW MPRLIERMHP PSQTFAPAHT APDPAALAHA SASTALDSPC  180
AEFQGRLDSQ HFDYSESFNF NDPMLEQGNS MLPLGWVVGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231411224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_42480
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150373e-42AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207548.11e-164transcription factor MYB2
SwissprotQ10MB45e-78MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A151QU011e-165A0A151QU01_CAJCA; Transcription factor MYB21
STRINGGLYMA03G38070.21e-99(Glycine max)
STRINGXP_007163207.12e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-73myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]