PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_42716

Common Name

KK1_043672

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

G2-like

Protein Properties

Length: 261aa MW: 29384.1 Da PI: 9.4582

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_42716	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.6	6e-33	8	62	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl C.cajan_42716 8 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 62 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-32	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.455	5	65	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.7E-24	8	63	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.69E-16	8	65	IPR009057	Homeodomain-like
Pfam	PF00249	7.4E-9	10	61	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-23	111	157	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MTMTRDPKPR LRWTADLHDR FVDAVTKLGG PDKATPKSVL RLMGLKGLTL YHLKSHLQKY 60 RLGQQARKQN EELHKENSSE SISRCSYVNF SNRSSGPNTS HRGDNEGGEI PIAEALRHQI 120 EVQKRLEEQL EVQKKLQMRI EAQGKYLQAV LEKAQKSLSL DGPGSIEASR AQLTEFNSAL 180 SHFMENMNKD SKQNIIDVND FYSKSHGSAL QYQEVVRGEN RDQKPKVEGG SIQFDLNIKG 240 SNDLVSAGGA EMDANMISYR V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-18	8	61	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	8	61	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	8	61	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	8	61	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_42716

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-122	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020206389.1	0.0	myb family transcription factor PHL11 isoform X1
Swissprot	C0SVS4	2e-80	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A151QYK6	0.0	A0A151QYK6_CAJCA; Myb family transcription factor APL
STRING	XP_007158199.1	1e-170	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	6e-83	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]