PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_42908

Common Name

KK1_041103

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LSD

Protein Properties

Length: 127aa MW: 14021.4 Da PI: 8.4957

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_42908	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.5	2.2e-13	5	29	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YP+GA++V+Ca+C+t+ C.cajan_42908 5 CNGCRNILVYPLGASNVCCAICNTI 29 ***********************97 PP
2	zf-LSD1	27.5	5.3e-09	44	68	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt L YPr A sV C+ C+++ C.cajan_42908 44 CGGCRTFLVYPRRAASVTCPYCHAI 68 ***********************97 PP
3	zf-LSD1	52	1.1e-16	82	106	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+++ C.cajan_42908 82 CGNCRTTLMYPYGAPSVKCAICHFI 106 ***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.3E-11	4	32	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.0E-11	5	29	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	7.2E-11	41	70	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.1E-7	44	68	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	5.6E-13	79	108	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.9E-15	82	106	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MRSVCNGCRN ILVYPLGASN VCCAICNTIN SVPPPRMEMS QLHCGGCRTF LVYPRRAASV 60 TCPYCHAINL APELNQVSHV HCGNCRTTLM YPYGAPSVKC AICHFITNVT VSIHSYNLFN 120 FTSFRSI

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269\|PubMed:15915636}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_42908

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Down-regulated by dark. {ECO:0000269\|PubMed:15915636}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020204593.1	2e-75	protein LSD1
Swissprot	Q0J7V9	5e-45	LSD1_ORYSJ; Protein LSD1
TrEMBL	A0A151R5P2	1e-86	A0A151R5P2_CAJCA; Uncharacterized protein
STRING	Lus10008066	2e-54	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4027	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-47	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]