PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_42913
Common NameKK1_044446
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GATA
Protein Properties Length: 245aa    MW: 26995.8 Da    PI: 6.0424
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_42913genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19175209135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  C.cajan_42913 175 CQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRL 209
                    *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.0E-16169219IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.833169205IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15171232No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14173207IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.26E-14174222No hitNo description
PfamPF003203.8E-17175209IPR000679Zinc finger, GATA-type
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
METIDSVDDL LEFASDIGQE DDDDEKSRKA CPSLNSKCGD PSFFNSLDLD DLNQSLSEFA  60
EEDLEWLSNK DAFPAVETFV DLSSIQPDTT KNQKTAPVLE NSTSSSNSNN SSNSISLLNS  120
CDHLKVPVRA RSKTRNRRRP GNADNSSQTV WGGQPINEIS KAEEGIQISP IGRKCQHCGA  180
EKTPQWRAGP LGPKTLCNAC GVRFKSGRLV PEYRPASSPT FRSDLHSNSH RKIIEMRKQK  240
HTGTG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_42913
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972870.0BT097287.1 Soybean clone JCVI-FLGm-16E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206969.20.0GATA transcription factor 1
SwissprotQ8LAU91e-51GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A151QW910.0A0A151QW91_CAJCA; GATA transcription factor 1
STRINGGLYMA10G25480.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.17e-50GATA transcription factor 1