PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_42958
Common NameKK1_044424
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family DBB
Protein Properties Length: 293aa    MW: 32320.1 Da    PI: 4.956
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_42958genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.3e-06447542
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  C.cajan_42958  4 QCSVCEAAEAKVLCCADEAALCWECDEKVHAAnklaskHQRVPL 47
                   7******99*********************66899999999986 PP
2zf-B_box28.33.6e-095495338
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                   ++kC+ ++e    +fC +++ llC++C l++H        H+
  C.cajan_42958 54 MPKCDICQEALGYFFCLEDRALLCRKCDLAIHTAnayvsgHQ 95
                   799*******9*********************5455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.85147IPR000315B-box-type zinc finger
CDDcd000211.38E-8347No hitNo description
SMARTSM003364.7E-11447IPR000315B-box-type zinc finger
PROSITE profilePS501199.3855299IPR000315B-box-type zinc finger
SMARTSM003362.1E-165299IPR000315B-box-type zinc finger
PfamPF006435.9E-75495IPR000315B-box-type zinc finger
CDDcd000211.81E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKIQCSVCEA AEAKVLCCAD EAALCWECDE KVHAANKLAS KHQRVPLSTS SSHMPKCDIC  60
QEALGYFFCL EDRALLCRKC DLAIHTANAY VSGHQRFLLT GVRVGLEATE LGTSSTSLKT  120
DSGEKISDTK SSSVSRKVST VPQPSSDYNE VLPIEVGDFP PAKESFGGGS TAGNMSQWTI  180
DEFMGLNDFS QNYDYMEGSS RADCGKIGDS GSPVLRSSEE EMEEDDNYLE RIPDSSWTVP  240
QIPSPPTASG LYWPKDPQFS SDSVLSVPDI CFPHMQQPQN RRIFSRHRSR RHL
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_42958
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983591e-170BT098359.1 Soybean clone JCVI-FLGm-23I7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206953.10.0B-box zinc finger protein 22
SwissprotQ9SYM25e-92BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A151QWM10.0A0A151QWM1_CAJCA; Putative salt tolerance-like protein At1g78600 family
STRINGXP_007149516.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-87light-regulated zinc finger protein 1