PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_43151

Common Name

KK1_041307

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

bHLH

Protein Properties

Length: 316aa MW: 35599.5 Da PI: 4.8702

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_43151	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.6e-12	148	191	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L C.cajan_43151 148 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 191 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-15	145	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-9	148	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-15	149	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.55E-5	149	195	No hit	No description
CDD	cd04873	0.00152	242	282	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MELSQLGFLD ELVAPRRDTW NAFSTAFCDL LPNAWTFDSF LETPSLPPFP ALDRRFECPY 60 STQVPPSYPF SDAFAMPLSD DPPPLPPSLQ AQEVAFRDNT HFGETKGVCK VEEQGTEVVV 120 PLFNVGLCDD RDRKPKPKKL EGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI 180 LGDTIDYMKE LLERIGKLQE EEGEEGTSQM NLLGFSKEQL KPNEAIVRNS PKFDVERRDQ 240 DTRISICCAT KPGLLLSTVN TLEALGLEIQ QCVISSFNDF SMEASCSEVA EQRNCISHEE 300 IKQALSRNAG FGGKCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	157	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_43151

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020204795.1	0.0	transcription factor bHLH93
Swissprot	Q9LSL1	1e-85	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A151R4Q7	0.0	A0A151R4Q7_CAJCA; Transcription factor bHLH93
STRING	XP_007156443.1	1e-168	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	9e-85	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]