PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_43189
Common NameKK1_042315
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 297aa    MW: 33419.8 Da    PI: 6.3526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_43189genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-13141186454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr+ +P+       K++Ka+ L  Av YI++L
  C.cajan_43189 141 NHVEAERQRREKLNQRFYALRSAVPNV-----SKMDKASLLSDAVAYINEL 186
                    799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-16290IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.806137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-18139208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-12141190No hitNo description
PfamPF000105.7E-11141186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-17141198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-15143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEWFYRLSQT RSYVAGDGVV GCAFSSAVDV WLSGVNEFEL NECDDRVREA RSHGIHTLVC  60
VSTPRGILEL GSCHVFTLDY SLLQLAKSVF EVNNVVPEKE KQRRRDSSDA STDSSEADAN  120
LALGNINNLR RAREGEALPI NHVEAERQRR EKLNQRFYAL RSAVPNVSKM DKASLLSDAV  180
AYINELKAKI NHLEVELEGN IKQDHVQTQT IHSSTTTNMR VEVRILGSEA MVRVQSLNVN  240
HPSARLMDAL RDVNLQILHA TMSNIKEMML QDVVVRVPHD LMTEDALKNA ILNRLSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-26135196263Transcription factor MYC2
5gnj_B3e-26135196263Transcription factor MYC2
5gnj_E3e-26135196263Transcription factor MYC2
5gnj_F3e-26135196263Transcription factor MYC2
5gnj_G3e-26135196263Transcription factor MYC2
5gnj_I3e-26135196263Transcription factor MYC2
5gnj_M3e-26135196263Transcription factor MYC2
5gnj_N3e-26135196263Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_43189
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150385e-57AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205460.10.0transcription factor MYC4
TrEMBLA0A151R1Y80.0A0A151R1Y8_CAJCA; Transcription factor bHLH14
STRINGGLYMA02G09670.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-48bHLH family protein