PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_43701
Common NameKK1_039499
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 332aa    MW: 36601.4 Da    PI: 8.6883
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_43701genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.91.1e-41193270178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+
  C.cajan_43701 193 RCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 270
                    6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-35187255IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.376191268IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.14E-38192272IPR004333Transcription factor, SBP-box
PfamPF031103.1E-31194267IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLDYEWGNPS PIMLTGNEDN AAAASDQAPR QIFDHYASHT LIPDHFLHAP THSSATTAAA  60
ATVDFTHHHH HFNPQPHHNH MNNHHHAFFD PRAFHSASPA SYPPPPSMLS LDPLPHVNCG  120
PGPGHGPGPG PGLLLVPKSE DINRPMDFVG SRIGLNLGGR TYFSSSEDDF VNRLYRRSRP  180
AEQGSTASSN SPRCQAEGCN ADLSQAKHYH RRHKVCEFHS KAATVIAAGL TQRFCQQCSR  240
FHLLSEFDNG KRSCRKRLAD HNRRRRKTQQ PTQEIQKSQP SLDNVARSPP DSGAQSSSSV  300
TVAVSPPDYF RQRPYQSANP STTSSSLFFS SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-32184267184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_43701
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203285.10.0squamosa promoter-binding-like protein 8
RefseqXP_020203286.10.0squamosa promoter-binding-like protein 8
TrEMBLA0A151R9H40.0A0A151R9H4_CAJCA; Squamosa promoter-binding-like protein 8
STRINGXP_007134545.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-74squamosa promoter binding protein-like 8