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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | C.cajan_43968 | ||||||||
| Common Name | KK1_044039 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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| Family | NF-YA | ||||||||
| Protein Properties | Length: 309aa MW: 34216.6 Da PI: 9.4419 | ||||||||
| Description | NF-YA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CBFB_NFYA | 98.4 | 7.7e-31 | 157 | 212 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
p YVNaKQy++I++RRq+Rak+ e+kl +k rkpy+heSRh hA+rRpRg+gGrF
C.cajan_43968 157 GPTYVNAKQYHGIIRRRQSRAKAVLENKL-IKRRKPYMHESRHLHAMRRPRGCGGRF 212
79***************************.**************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00521 | 5.1E-35 | 154 | 215 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE profile | PS51152 | 36.263 | 155 | 215 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 1.2E-22 | 158 | 180 | IPR001289 | Nuclear transcription factor Y subunit A |
| Pfam | PF02045 | 2.8E-26 | 158 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 1.2E-22 | 189 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 309 aa Download sequence Send to blast |
MAMQTAYLKE HEGIVHNSVG QLSAPWWSAF GSQSVYGEYC GQIKPFSLDI SNCVEQFSSG 60 KQTVRGVEQL LDKGHATQFT IFPDDSKMSG DAQNPQATLS LQSPLAEPHN RFEIGFNQPM 120 ICAKYPYMDQ FYGLFSAYGP QISGRIMLPI NMTSDDGPTY VNAKQYHGII RRRQSRAKAV 180 LENKLIKRRK PYMHESRHLH AMRRPRGCGG RFLNTKTSTN GNGKKESEAS KTGSRQLHSS 240 ASQSSEVLQS EVGTLNSSKE TNRSSPNISG SEVTSIYLRE ADMIGSGHGI IMPTKWVAAV 300 PDNCCNLKV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4awl_A | 3e-17 | 156 | 220 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 170 | 189 | RRRQSRAKAVLENKLIKRRK |
| 2 | 170 | 190 | RRRQSRAKAVLENKLIKRRKP |
| 3 | 171 | 190 | RRQSRAKAVLENKLIKRRKP |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | C.cajan_43968 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020206664.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| Refseq | XP_020206665.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| Refseq | XP_020206666.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| Refseq | XP_020206667.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| Refseq | XP_020206668.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| Refseq | XP_020206669.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| Refseq | XP_029125797.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| Refseq | XP_029125798.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| Refseq | XP_029125799.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| Refseq | XP_029125800.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| Refseq | XP_029125801.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| Refseq | XP_029125802.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
| TrEMBL | A0A151QX66 | 0.0 | A0A151QX66_CAJCA; Nuclear transcription factor Y subunit A-10 | ||||
| STRING | GLYMA02G35190.2 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3794 | 34 | 64 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G06510.2 | 2e-65 | nuclear factor Y, subunit A10 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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