PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_44547
Common NameKK1_039032
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 460aa    MW: 49143.8 Da    PI: 8.6984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_44547genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15277322555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  C.cajan_44547 277 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 322
                    9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-18270334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-13277322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-18277330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-17277326No hitNo description
SMARTSM003532.2E-18278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSQCVPSWDV DDNPPPPRLS LRSNSNSTAP DVPMLDYEVA ELTWENGQLS MHGLGLPRVP  60
VKPPTSAANK YTWEKPRASG TLESIVNQAT SLPQRGKPSL NGDGVGVCGG FVVPWFDPHA  120
HGGGGGATAN TVGMDALVPC SKREARKQGV ESVPGGTCMV GCSTRVGSCC GNQGAKGHEM  180
SGRDQSVSGS ATFGRDSKHV TLDTCDREFG VAFTSTSINS LDNTSSAKHC TKTTTVDDHD  240
SVSHSKPVGE DGDKEKKKRA NGKSSVSTKR SRAAAIHNQS ERKRRDKINQ RMKTLQKLVP  300
NSSKTDKASM LDEVIEYLKQ LQAQVQMMNR INMSSMMLPL TMQQQLQMSM MSPMGMGLGM  360
GMGMGMGMGM DMNSMNRANI PGIPPVLHPS AFMPMAASWD AAAVAVGGSD RLQGTPATVM  420
PDPLSTFFGC QSQPMNMDAY SRLAAMYQQL HQPPASGSKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285ERKRRD
2281286RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_44547
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350521e-157AC235052.1 Glycine max strain Williams 82 clone GM_WBb0119P14, complete sequence.
GenBankAC2352521e-157AC235252.1 Glycine max strain Williams 82 clone GM_WBb0036F08, complete sequence.
GenBankAC2352731e-157AC235273.1 Glycine max strain Williams 82 clone GM_WBb0046P21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202885.10.0transcription factor UNE10 isoform X1
SwissprotQ8GZ381e-108UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A151RAT60.0A0A151RAT6_CAJCA; Transcription factor UNE10
STRINGXP_007140812.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-102bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]