PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_44585

Common Name

KK1_045428

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

WOX

Protein Properties

Length: 228aa MW: 26516.9 Da PI: 9.3891

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_44585	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.3e-21	83	142	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ C.cajan_44585 83 TRWNPTQEQIGILEMLYKGgMRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARERQ 142 7***************99************************************97 PP
2	Wus_type_Homeobox	117.2	7.6e-38	83	144	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+lyk G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq C.cajan_44585 83 TRWNPTQEQIGILEMLYKGGMRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQ 144 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.8E-7	80	147	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.28E-12	82	150	IPR009057	Homeodomain-like
CDD	cd00086	5.99E-5	83	144	No hit	No description
Pfam	PF00046	6.9E-19	83	142	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.8E-8	84	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.863	88	143	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MKVHQFTRGF WEHEPFLTLG FKRLRPLAPK LPNTDTTTPS VPFDLKSFIR PESGPRKHVS 60 SHDNKKDPPS PQSQVETHIP GGTRWNPTQE QIGILEMLYK GGMRTPNAQQ IEQITVQLGK 120 YGKIEGKNVF YWFQNHKARE RQKQKRNSLT FSHSHSHSHS PPTPSIHSVV TLETTRGEVV 180 ERDYEEDSPY KKKCRRWVFE CLEGESKLAC EEEEHRTLEL FPLHPEGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_44585

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096528	1e-163	BT096528.1 Soybean clone JCVI-FLGm-15J7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020207572.1	1e-170	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	1e-69	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A151QTW1	1e-168	A0A151QTW1_CAJCA; WUSCHEL-related homeobox 4
STRING	GLYMA06G04470.1	1e-137	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6132	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	2e-71	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]