PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_44596
Common NameKK1_044001
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 171aa    MW: 19893.8 Da    PI: 10.4065
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_44596genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.5e-162761898
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                   +p +f+e++g+    +  l l++++g +W+++l  +k+ g+++++kGWkeF++ + L  g  +vF+ +++s f   v++f+
  C.cajan_44596  2 FPERFVEKYGE--GLPNSLFLKTPNGAEWKFNL--EKRNGKIWFEKGWKEFAEYHSLAHGHLLVFRCQRTSLF--QVHIFD 76
                   799******74..47778***************..9******************************8776777..999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.325178IPR003340B3 DNA binding domain
CDDcd100172.95E-15176No hitNo description
SuperFamilySSF1019363.92E-19178IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-4178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-21278IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-13276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MFPERFVEKY GEGLPNSLFL KTPNGAEWKF NLEKRNGKIW FEKGWKEFAE YHSLAHGHLL  60
VFRCQRTSLF QVHIFDLSAS EIDYPPRRKQ GKTVSNNHGN RPPIVKILEL ECHRSGQKRK  120
DNSAVECIQP YQLRSRKSVK VDYNLILPKE ALHHTGRKGR GIRFCVSSSI S
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_44596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206622.11e-115B3 domain-containing transcription factor VRN1
TrEMBLA0A151QXP11e-124A0A151QXP1_CAJCA; B3 domain-containing protein At1g49475 family
STRINGGLYMA18G30790.11e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-22B3 family protein