PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_44684
Common NameKK1_044411
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 148aa    MW: 16446.8 Da    PI: 10.5055
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_44684genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind668.3e-21369632101
                    -HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
   HSF_DNA-bind  32 deeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                     + efa+++LpkyFk +nf+SF RQLn+YgF+kv  ++         weF+++ F++gk+ ll++i+r+k
  C.cajan_44684  36 ATAEFARDLLPKYFKYNNFSSFFRQLNTYGFRKVVPDR---------WEFANDCFRRGKRGLLRDIQRRK 96 
                    5789********************************99.........*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-282195IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.03E-192495IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-203795IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.8E-183795IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-94456IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-95769IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MAPLPAEQTG ESAPSESQRS IPTPFLTKAY QLHRLATAEF ARDLLPKYFK YNNFSSFFRQ  60
LNTYGFRKVV PDRWEFANDC FRRGKRGLLR DIQRRKILSV PAAATVTTAN AITVAMAAPA  120
VRTVSPTTSS DEQCTAPRVA PLPAAELL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-163210046124Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_44684
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963055e-74JN896305.1 Glycine max heat shock transcription factor HSFB2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426020.12e-68PREDICTED: heat stress transcription factor B-2b
RefseqXP_017426021.12e-68PREDICTED: heat stress transcription factor B-2b
RefseqXP_017426023.12e-68PREDICTED: heat stress transcription factor B-2b
RefseqXP_017426024.12e-68PREDICTED: heat stress transcription factor B-2b
RefseqXP_017426025.12e-68PREDICTED: heat stress transcription factor B-2b
RefseqXP_017426026.12e-68PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D31e-39HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A151QW761e-104A0A151QW76_CAJCA; Heat stress transcription factor B-2b
STRINGXP_007158472.12e-65(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-41HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]