PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_44802
Common NameKK1_043183
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 299aa    MW: 32536.4 Da    PI: 8.4136
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_44802genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.75.2e-41162239178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +Cq+egC++dls a++yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+
  C.cajan_44802 162 RCQAEGCNVDLSAARHYHRRHKVCEFHSKAATVVAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 239
                    6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.8E-34158224IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.026160237IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-38161240IPR004333Transcription factor, SBP-box
PfamPF031106.8E-31163236IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLDYEWVNPS TIRLAAANDG GAATDLDQAH RQMFDHNYAM LPEPILQGFN PPHHPLFDPR  60
AFLGASTSSF SPPPLNQIPP LASSHCGLGL GPGLGLLLMP KSDDAVNFSS ASGLDPAPGP  120
GLGLNLGGRT YFPSCLDDTV GLFYRTSKAA ESILTVSSNF PRCQAEGCNV DLSAARHYHR  180
RHKVCEFHSK AATVVAAGLT QRFCQQCSRF HLLSEFDNGK RSCRKRLADH NRRRRKTQQP  240
DQEIHKSHPS LDNAARSSSE SGAQSPSSLK VAVDYFQQRP NQTRDSLSTT SGSLFFSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29157236584squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_44802
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150373e-46AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140981.11e-123hypothetical protein PHAVU_008G157200g
RefseqXP_007140982.11e-123hypothetical protein PHAVU_008G157200g
TrEMBLA0A151QZT60.0A0A151QZT6_CAJCA; Squamosa promoter-binding-like protein 8
STRINGXP_007140981.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-55squamosa promoter binding protein-like 8