PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_45119
Common NameKK1_040052
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 420aa    MW: 45636.7 Da    PI: 7.7486
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_45119genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.93.9e-0997117526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C+++ + G C+yG+rCkF H+
  C.cajan_45119  97 VCNYWIQ-GNCSYGERCKFLHS 117
                    6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.3381844IPR000571Zinc finger, CCCH-type
SMARTSM003560.212043IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.13693119IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-694118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-794117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-796115IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-697117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.3E-50116410IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.47E-50117171IPR017986WD40-repeat-containing domain
SMARTSM003207.2E-7123162IPR001680WD40 repeat
PfamPF004001.2E-5127162IPR001680WD40 repeat
PROSITE profilePS5029423.203130379IPR017986WD40-repeat-containing domain
PROSITE profilePS5008215.555130171IPR001680WD40 repeat
PRINTSPR003207.0E-7149163IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780149163IPR019775WD40 repeat, conserved site
SMARTSM003204.4202239IPR001680WD40 repeat
SuperFamilySSF509782.47E-50209411IPR017986WD40-repeat-containing domain
SMARTSM003203.7E-4246283IPR001680WD40 repeat
PfamPF004000.0012250283IPR001680WD40 repeat
PROSITE profilePS5008213.249253292IPR001680WD40 repeat
PRINTSPR003207.0E-7270284IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780270284IPR019775WD40 repeat, conserved site
SMARTSM003201.6E-4286323IPR001680WD40 repeat
PfamPF004000.0014288322IPR001680WD40 repeat
PRINTSPR003207.0E-7310324IPR020472G-protein beta WD-40 repeat
SMARTSM003200.99327370IPR001680WD40 repeat
SMARTSM003200.72373410IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDVDGGSKRV YNRLGADAKH QKVCFHWQAG KCNRYPCPFL HSELPPSNGA SSKRAHEASG  60
LSGPRRGPNF NNTWGRGGGR GGGGGGRGAA VVKADKVCNY WIQGNCSYGE RCKFLHSWSV  120
GDGFSMLTQL EGHQKAVSAI AFPSGSDKLY TGSTDETVRI WDCQSGKCIG VVNLGGDVGC  180
MISEGPWVFV GIPNFVKAWN TQNLMELSLN GPVGQVYALV VNNDMLFAGT QDGSILAWKF  240
NVVTNCFEPA ASLKGHSRGV VSLVVGANRL YSGSMDNTIR VWNLETLQCL QTLTEHTSVV  300
MSVLCWDQFL LSCSLDKTVK VWYATESGNL EVTYTHNEEH GILTLCGMHD SQGKPVLLCS  360
CNDNTVRLYD LPSFAERGKI MTKQEVRAIQ IGPNGIFFTG DGTGQVRVWN WVAEATSTIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-251184108323Tako8
6g6n_A6e-251184108323Tako8
6g6n_B6e-251184108323Tako8
6g6n_C6e-251184108323Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17586RGGGRGGGGGGR
27785GGRGGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_45119
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150443e-62AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203744.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A151R7S30.0A0A151R7S3_CAJCA; Zinc finger CCCH domain-containing protein 48
STRINGGLYMA16G32370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1