PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_45241
Common NameKK1_045110
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 490aa    MW: 53361.2 Da    PI: 7.5904
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_45241genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57e-11124148226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +++ C +++ t tCk+Gd+CkF H+
  C.cajan_45241 124 GEKDCAHYMLTRTCKFGDSCKFDHP 148
                    7889********************8 PP
2zf-CCCH34.82.7e-11175201127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++ C++f++t  Ck+G++CkF+H++
  C.cajan_45241 175 PGEPDCPYFLKTQRCKFGSKCKFNHPK 201
                    5789*********************96 PP
3zf-CCCH39.97.2e-13219243327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    +++C f+++tG Ck+G+ CkF+H++
  C.cajan_45241 219 EPPCTFYMKTGKCKFGAACKFHHPK 243
                    79*********************96 PP
4zf-CCCH39.21.2e-12296319326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    ++ C+f+++tG CkyG +C+++H+
  C.cajan_45241 296 EVDCPFYMKTGSCKYGVTCRYNHP 319
                    689********************9 PP
5zf-CCCH361.2e-11382405326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    + +C+++++tG+Ck+ +rCkF+H+
  C.cajan_45241 382 QIECDYYMKTGECKFAERCKFHHP 405
                    568********************8 PP
6zf-CCCH40.74e-13434457427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    ++C+++++tGtCk+G++CkF H+p
  C.cajan_45241 434 VICPYYLKTGTCKFGATCKFDHPP 457
                    68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.507122150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5122149IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011122149IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8124148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4128147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187174202IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-6174201IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9176201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5179200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4180199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.305216244IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-6216243IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10219243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6220244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5221242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051293321IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6293320IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10296319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5297320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4299318IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5379406IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07379407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6381407IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8383405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4385405IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286430458IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8430457IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5434457IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10434457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-6435455IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MENHIYASSY SPSTNYRFLD PDAAMFLSHH RPDSAALRFP SAALDADIAP PGVTSRIASS  60
AAAAASLLSS WPPAELKRSS DALYHPTILG TLGQNEAWYS TNSLAKRPRY ESASNVTIYP  120
QRPGEKDCAH YMLTRTCKFG DSCKFDHPIW VPEGGIPDWK EVPNIVTSET PPERPGEPDC  180
PYFLKTQRCK FGSKCKFNHP KVSSENADVS SGLPERPSEP PCTFYMKTGK CKFGAACKFH  240
HPKDVQIQLS DESSHTVAQT QTNSLMGGAI GDTQPIKSLI SPSLQNSKGL PVRLGEVDCP  300
FYMKTGSCKY GVTCRYNHPD RNAINPSIAA LGPSILPSSA ANLNIGVLNP AVSVYQAFDP  360
RLSNPMSQVG IAETIYPQRP GQIECDYYMK TGECKFAERC KFHHPIDRSA PSLSKQATAV  420
KLTPAGLPRR EGAVICPYYL KTGTCKFGAT CKFDHPPPGE VMEMAKSQGT SANGGEAEDD  480
EKDTSAPEQH
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_45241
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-110AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207375.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A151QUM60.0A0A151QUM6_CAJCA; Zinc finger CCCH domain-containing protein 37
STRINGXP_007133464.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)