PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_45357
Common NameKK1_042652
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 205aa    MW: 21424.7 Da    PI: 9.1495
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_45357genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-0624361527
                   -TTTTT-SS-SSS CS
        zf-CCCH 15 CkyGdrCkFaHgp 27
                   Ck+Gd+C+FaHg+
  C.cajan_45357 24 CKFGDKCHFAHGE 36
                   ***********96 PP
2zf-CCCH37.34.7e-12172196126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC++fa+ G C +G+rC+FaHg
  C.cajan_45357 172 FKTKLCDNFAK-GSCTFGERCHFAHG 196
                    69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8536IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.202537IPR000571Zinc finger, CCCH-type
PfamPF146080.0122135No hitNo description
Gene3DG3DSA:4.10.1000.102.7E-72339IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.47E-1668148IPR004088K Homology domain, type 1
SMARTSM003223.4E-1277147IPR004087K Homology domain
PROSITE profilePS5008414.82378142IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-1679146IPR004088K Homology domain, type 1
PfamPF000132.4E-1280143IPR004088K Homology domain, type 1
CDDcd001051.11E-1580143No hitNo description
Gene3DG3DSA:4.10.1000.102.7E-16167202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-8171201IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7171197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.164171198IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9172196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MMNLKPAAPP PRTVAAPQPV PNGCKFGDKC HFAHGEWELG KLIAPSMDDH RPLGPPAVGR  60
MAGRIEPPPG LAASFGAIST AKISVEASLA GAIIGKGGVN SKQICRQTGA KLSIREHESD  120
PNLRNIELEG TFEQIKEASN MVKDLLVTVS MSAPPKSTPG VPGAPAPPGS NFKTKLCDNF  180
AKGSCTFGER CHFAHGAAEL RKTGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_45357
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0943100.0BT094310.1 Soybean clone JCVI-FLGm-18B11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205739.11e-133zinc finger CCCH domain-containing protein 14
SwissprotQ69XQ33e-67C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A151R1041e-147A0A151R104_CAJCA; Zinc finger CCCH domain-containing protein 44
STRINGGLYMA02G29360.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-61C3H family protein