PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_45773
Common NameKK1_046257
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 159aa    MW: 18418.1 Da    PI: 8.9154
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_45773genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-181257348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +W+ eEde+lv++++ +G g+W+ I+ + g+ R++k+ck+rw++yl
    C.cajan_45773 12 AWSSEEDEILVNYIQVHGEGNWRDISIRAGLERCGKSCKHRWLNYL 57
                     7*******************************************97 PP
2Myb_DNA-binding452.4e-1463108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE el+++++k+lG++ W+ Ia +++ gR++ ++ ++w++yl
    C.cajan_45773  63 RGNISVEEKELIIRLHKLLGNR-WSMIAGRLP-GRSADEIENYWNTYL 108
                      78999*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.725161IPR017930Myb domain
SuperFamilySSF466891.98E-289104IPR009057Homeodomain-like
SMARTSM007172.3E-13959IPR001005SANT/Myb domain
PfamPF002494.2E-161257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-211264IPR009057Homeodomain-like
CDDcd001679.29E-111257No hitNo description
SMARTSM007171.0E-1262110IPR001005SANT/Myb domain
PROSITE profilePS5129416.37662112IPR017930Myb domain
PfamPF002491.8E-1263108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2065111IPR009057Homeodomain-like
CDDcd001672.88E-967108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDRKAYCQKE RAWSSEEDEI LVNYIQVHGE GNWRDISIRA GLERCGKSCK HRWLNYLKPT  60
MHRGNISVEE KELIIRLHKL LGNRWSMIAG RLPGRSADEI ENYWNTYLSN EVEEKQNNTT  120
LPSTNMTTTS MLTIESPLAG NCMESLPAVI KPKVVRLKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-201311230128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_45773
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208026.11e-115transcription factor MYB114
SwissprotP102901e-46MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A151QRL71e-114A0A151QRL7_CAJCA; Anthocyanin regulatory C1 protein
STRINGGLYMA15G19360.15e-60(Glycine max)
STRINGXP_007138671.16e-60(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-45myb domain protein 3
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]