PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_45793
Common NameKK1_046485
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 331aa    MW: 37244.3 Da    PI: 7.5482
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_45793genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-084161526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   +C f+++ G C yG+rC++ H+
  C.cajan_45793 41 ICTFYQK-GVCAYGSRCRYDHV 61
                   6******.*************7 PP
2zf-CCCH19.61.6e-06114134526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ fa+ G C++Gd+C+ +Hg
  C.cajan_45793 114 ICS-FAAAGNCPRGDKCPHIHG 134
                    677.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.9E-43762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-53860IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-44160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5164163IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-64161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.793109136IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014110135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4114134IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.37E-13168242No hitNo description
Gene3DG3DSA:3.30.40.103.7E-10171237IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.0013177237No hitNo description
PfamPF000972.3E-7178235IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001843.2E-7178235IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.386178236IPR001841Zinc finger, RING-type
PROSITE patternPS005180202211IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.07265293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.225265294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGNCPLLSHV EKRLGEEELS FCNRPLVEGD FEIQRMKRGH ICTFYQKGVC AYGSRCRYDH  60
VKASRETSST PSSSVIEHQT LVSDAVAFGD TRTTSNGEDN VGQSIITSPS ELSICSFAAA  120
GNCPRGDKCP HIHGDLCPTC GKHCLHPFRP EEREEHMKSC ENKHKHLEAL KRSQEIECSV  180
CLERVLSKPT AAERKFGLLS ECDHPFCISC IRNWRSSNPT LGMDVNSTLR ACPICRKLSY  240
FVIPSVIWYS TTEEKQEIID NYKAKLKSID CKHFDFGDGN CPFGTSCFYK HAYRDGRLEQ  300
VVLRHLGAAD GNTVIAKDIR LSDFLSNMHL R
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_45793
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029126128.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-148C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A151QR680.0A0A151QR68_CAJCA; E3 ubiquitin-protein ligase makorin
STRINGGLYMA15G42750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-144C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]