PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_45837
Common NameKK1_046971
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GATA
Protein Properties Length: 347aa    MW: 38254.3 Da    PI: 6.6723
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_45837genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.7e-18232266135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  C.cajan_45837 232 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 266
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.9E-835322IPR016679Transcription factor, GATA, plant
SMARTSM004011.9E-17226276IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.149226262IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-16227290No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14228263IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.45E-14231278No hitNo description
PfamPF003201.3E-15232266IPR000679Zinc finger, GATA-type
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDSAKFSPST VHPDLFPFDT NKTNNSSDPF IVEDLFDFSN HDDAVITDAT FDSVPVNSTD  60
SSTVTAVESC NSSSFSDPNP ATRNLSNANF SGDLCVPYDD IAELEWLSNF VEESFSSEDL  120
QQLQLISGMK GPNDDASEAR GFHSEPTRNS PIFNSEVSVP ARARSKRSRG PPCNWASRLL  180
VLSPATSSTE PEVVAPSPTS SLPGPVSAKK PAKASPRKKD SGDGSGGDGR RCLHCATDKT  240
PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL TKHSNSHRKV LELRRQKEMV  300
RAQQHQHQHQ QQQFLPHHHH QNMMFDVSNG DEYLIHQHVG PDFRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_45837
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208394.10.0GATA transcription factor 12 isoform X2
SwissprotP697811e-95GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A151QPZ20.0A0A151QPZ2_CAJCA; GATA transcription factor
STRINGXP_007140987.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-90GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]