PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_45979

Common Name

KK1_046169

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 205aa MW: 22460.9 Da PI: 10.1441

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_45979	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.6	1.7e-27	4	104	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C +C++lr++C+++Cv++p++ p+ q++++ +++k++G++ +l+l++a+pe +r+++++sl++eA+ r+ +P yG++g+++++++ ++++ C.cajan_45979 4 SCYGCRILRKGCPENCVIRPCLewinsPEGQSNATLFLAKFYGRAGLLNLINAAPEPHRREVFKSLMFEACGRIVNPTYGSMGLFWTGEWAQCEAA 99 6********************************************************************************************999 PP DUF260 92 aelal 96 ++++ C.cajan_45979 100 VNAVI 104 88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.34	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-22	4	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MKMSCYGCRI LRKGCPENCV IRPCLEWINS PEGQSNATLF LAKFYGRAGL LNLINAAPEP 60 HRREVFKSLM FEACGRIVNP TYGSMGLFWT GEWAQCEAAV NAVINGMEAS NSQITGTRRS 120 NHVPQILGIR HVARDGGMDR VKGKGKAKRS AKEMKPKQRV AAPSREPGGS EGKTKSEQTV 180 EALLVSQDKP SRTRGAELNL ELTLG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_45979

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020207964.1	1e-151	LOB domain-containing protein 42
Swissprot	Q9CA30	7e-55	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A151QRU9	1e-150	A0A151QRU9_CAJCA; LOB domain-containing protein 42
STRING	GLYMA08G31143.1	3e-90	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14785	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	3e-57	LOB domain-containing protein 42