PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_46239
Common NameKK1_049115
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 69aa    MW: 7987.18 Da    PI: 5.4552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_46239genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.4e-135624198
                   TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    + + W vk+ +  ++ + +++ GW +F+++n+L+ gD+++F+l++ +++ l ++vfr
  C.cajan_46239  5 FRKNLWPVKFAFHSSGVSGMFSVGWHSFARENELQIGDVCIFELVNGEDGILDLHVFR 62
                   56788*****9999999999************************98899999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.717164IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-13662IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-12665IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-10762IPR003340B3 DNA binding domain
CDDcd100175.01E-12862No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MMIQFRKNLW PVKFAFHSSG VSGMFSVGWH SFARENELQI GDVCIFELVN GEDGILDLHV  60
FRDQCEVMH
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_46239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020209298.15e-43B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_020209299.15e-43B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A151UI037e-44A0A151UI03_CAJCA; B3 domain-containing transcription factor VRN1
STRINGGLYMA09G20150.11e-21(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-10B3 family protein