PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_46240
Common NameKK1_049116
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 198aa    MW: 22592.2 Da    PI: 10.1845
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_46240genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.1e-1792180297
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                    f+  +++ +     l +p++f +++ +  +++  ++le ++grsW v +  +  +    + +GW++F+++n+Lk+gD++vF+l+++ ++ +++v +
  C.cajan_46240  92 FTLVMKPTYIIGYYLDIPREFSKQYLK--RTHAVVILEVLDGRSWPVIY--SAPR----INGGWQKFASENNLKVGDVCVFELIQKiQGLTFKVFI 179
                    4455555555555699******99963..45678***************..4444....99***********************987888666665 PP

                    E CS
             B3  97 f 97 
                    f
  C.cajan_46240 180 F 180
                    5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2284180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-2385181IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-2290181No hitNo description
PROSITE profilePS5086313.60691183IPR003340B3 DNA binding domain
SMARTSM010191.4E-1091181IPR003340B3 DNA binding domain
PfamPF023627.6E-1592180IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTIVKSTLSS PPPCKKMKNS ITTNVERSTN GVNLHRRIQT RSTSSQKTKF IKQELDEDES  60
KGVFNTECTK VEQLTSTALT KATAFRSEQP FFTLVMKPTY IIGYYLDIPR EFSKQYLKRT  120
HAVVILEVLD GRSWPVIYSA PRINGGWQKF ASENNLKVGD VCVFELIQKI QGLTFKVFIF  180
PAISQGNPLF HFICTMRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_46240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020209299.11e-131B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A151UHX61e-145A0A151UHX6_CAJCA; B3 domain-containing protein Os11g0197600 family
STRINGGLYMA09G18790.22e-82(Glycine max)
STRINGGLYMA09G20150.15e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-14related to vernalization1 1