PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_46958

Common Name

KK1_048597

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

ERF

Protein Properties

Length: 253aa MW: 28427.2 Da PI: 8.9769

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_46958	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65	1.5e-20	116	166	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f ta eAaka+++a+ kl+g C.cajan_46958 116 HYRGVRQRP-WGKYAAEIRDPNKRG--SRVWLGTFETAIEAAKAYDRAAFKLRG 166 8******.******96655..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	9.8E-33	115	175	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-37	116	180	IPR001471	AP2/ERF domain
Pfam	PF00847	3.5E-14	116	166	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-23	116	175	IPR016177	DNA-binding domain
CDD	cd00018	1.13E-30	116	174	No hit	No description
PROSITE profile	PS51032	24.157	116	174	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.1E-14	117	128	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.1E-14	156	176	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MASADEISAL KTIKLHLLGE LSPLSLTQSN DNSSDSSLTL DQIFLNFPTT STQNHFPLCQ 60 TQTQTSPLEF TFPTTHDAKK PQASRKPSLQ ISLPRKTEWI QFGEAEVAEK VEEKKHYRGV 120 RQRPWGKYAA EIRDPNKRGS RVWLGTFETA IEAAKAYDRA AFKLRGSKAI LNFPLEAGAH 180 DRKRPREEEE KAVEVVKREK IEESDVSRIK DTPLTPSSWL GLWATDVNGI FNVPPLSPLS 240 PHPPLGYPQL MVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-30	115	179	4	68	ATERF1
3gcc_A	1e-30	115	179	4	68	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_46958

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020209107.1	0.0	ethylene-responsive transcription factor 5
Swissprot	O80341	6e-65	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A151QLR7	0.0	A0A151QLR7_CAJCA; Ethylene-responsive transcription factor 5
STRING	GLYMA11G03900.1	1e-110	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1085	34	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	1e-44	ethylene responsive element binding factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]