PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_47004
Common NameKK1_045386
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 360aa    MW: 40808.7 Da    PI: 6.097
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_47004genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-072983302254
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +yp++e++++L +++gL+ +q+ +WF N+R +
  C.cajan_47004 298 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 330
                    59*****************************87 PP
2ELK29.61.6e-10251272122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELKh+L+++Y+ +++++++E++
  C.cajan_47004 251 ELKHELKQGYKDKIVDIREEIL 272
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.9E-1987131IPR005540KNOX1
PfamPF037902.1E-1789130IPR005540KNOX1
SMARTSM012561.7E-24139194IPR005541KNOX2
PfamPF037911.2E-18143193IPR005541KNOX2
SMARTSM011885.1E-4251272IPR005539ELK domain
PROSITE profilePS512139.969251271IPR005539ELK domain
PfamPF037891.2E-5251272IPR005539ELK domain
PROSITE profilePS5007111.612271334IPR001356Homeobox domain
SuperFamilySSF466897.7E-16273337IPR009057Homeodomain-like
SMARTSM003891.2E-10273338IPR001356Homeobox domain
CDDcd000863.46E-11274335No hitNo description
Gene3DG3DSA:1.10.10.605.9E-25278335IPR009057Homeodomain-like
PfamPF059209.5E-18291330IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAFHEHLPHE ITFQAFAEEQ QLGQSRDMQR LLPLSGGAPT WLNGGSVRQQ NFLHLQPESV  60
GAQQNDDVRG GMDRNRTESN SEADDLAEYK ADILRHPLYD QLLSAHVSCL RIATPVDQLP  120
RIDAQLQQSQ RVVDKYSALG NAVVDDKDLD QFMTHYVILL CAFKEQLQQH VRVHAMEAVM  180
ACWELEQSLQ SLTGVSPGEG TGATMSDDEE DQAESNANLY EGSMDGADSL SFGPLVPTET  240
ERSLMERVRQ ELKHELKQGY KDKIVDIREE ILRKRRAGKL PGDTTSLLKA WWQSHSKWPY  300
PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHTNPSSSS GSKSKRKRWV CSCLAASVSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327347RKRNWHTNPSSSSGSKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_47004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207550.10.0homeobox protein knotted-1-like 13 isoform X1
SwissprotP480001e-163KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A151QTZ00.0A0A151QTZ0_CAJCA; Homeobox protein knotted-1-like 3
STRINGXP_007138444.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-161KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]