PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_47016

Common Name

KK1_047804

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 245aa MW: 27239.4 Da PI: 9.0984

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_47016	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00092	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H C.cajan_47016 110 YQCKTCNRCFPSFQALGGHRASH 132 9***********99999998887 PP
2	zf-C2H2	14.1	0.00014	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H C.cajan_47016 150 HECSICGAEFSSGQALGGHMRRH 172 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.11E-9	109	172	No hit	No description
PROSITE profile	PS50157	10.221	110	137	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.08	110	132	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.2E-10	110	134	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	112	132	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.8E-4	146	172	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	5.9E-13	149	174	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	150	172	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	150	172	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MQLQQEFLVV SKDDTQMIIK GKRTKRQRAP SPLRLLMPNS TSSSTNNSNS IDSTTTTTTI 60 ELRQDEDMAN CLILLAQGRH HVTAPASRHD DNENNNDNND DNKSTRLYLY QCKTCNRCFP 120 SFQALGGHRA SHKKPRQNTG TVSTTKAKAH ECSICGAEFS SGQALGGHMR RHRSLVHASM 180 TTSMSGGNVV AGGSGSHEYQ EAKKPFKLDL NLPAPDDDHR ESKFSFQQRE KVIVFSKSSL 240 VDCHY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_47016

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020208777.1	1e-151	zinc finger protein ZAT5
TrEMBL	A0A151QN48	0.0	A0A151QN48_CAJCA; Zinc finger protein 1
STRING	GLYMA10G06760.2	1e-104	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	2e-47	C2H2 family protein