PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_47041
Common NameKK1_047678
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 336aa    MW: 37982 Da    PI: 6.6755
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_47041genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.3e-182471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
    C.cajan_47041 24 RGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 71
                     89********************************************97 PP
2Myb_DNA-binding48.52.1e-1577120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
    C.cajan_47041  77 RGNITLEEQLLILELHGRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 120
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.5891975IPR017930Myb domain
SuperFamilySSF466891.12E-3021118IPR009057Homeodomain-like
SMARTSM007171.4E-142373IPR001005SANT/Myb domain
PfamPF002493.6E-162471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-222578IPR009057Homeodomain-like
CDDcd001672.29E-112671No hitNo description
PROSITE profilePS5129417.99476126IPR017930Myb domain
SMARTSM007171.0E-1376124IPR001005SANT/Myb domain
PfamPF002493.6E-1477120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2279125IPR009057Homeodomain-like
CDDcd001673.08E-792120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEVKGRLCNN STTIQSEDEM DLRRGPWTVD EDLALINYIA NHGEGRWNSL ARSAGLKRTG  60
KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHGRWGNRWS KIAQYLPGRT DNEIKNYWRT  120
RVQKHAKQLK CDVNSKQFKD AMRYLWMPRL VERIQAAAAA ATTTAAAATT GSPASATTTI  180
TNNNIAYNNY DNNNINNNIE VHSGNMMMSS AIMKNNFGGS HVTHSYTPEN SSTGASSDSF  240
GTQVSPVSDM TQDYYNNVTV GGNNNHNPNP DYYHQQAHDQ LSFLDCITSP SGLFPHEMDF  300
ESMEPNTPWI QNNGDSSNGF WNVENMLLFQ QLSDNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-252111824120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_47041
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208715.10.0transcription factor MYB108
SwissprotQ10MB47e-90MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A151QND20.0A0A151QND2_CAJCA; Myb-related protein 305 family
STRINGXP_007147396.11e-167(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.14e-85myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]