PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_47328

Common Name

KK1_050546

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LSD

Protein Properties

Length: 61aa MW: 6803.03 Da PI: 8.0293

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_47328	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.5	5.3e-14	5	29	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YP+GA++V+Ca+C+t+ C.cajan_47328 5 CNGCRNILVYPLGASNVCCAICNTI 29 ***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	5.1E-12	4	32	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.4E-12	5	29	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
MRSVCNGCRN ILVYPLGASN VCCAICNTIN SVPPPRMLSF KDFRYFLVTT CLECSFGFTL 60 D

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_47328

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020204593.1	3e-18	protein LSD1
TrEMBL	A0A151UDE2	2e-36	A0A151UDE2_CAJCA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	1e-12	lsd one like 1