PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_47828
Common NameKK1_046711
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GATA
Protein Properties Length: 247aa    MW: 27905.9 Da    PI: 8.9914
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_47828genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.2e-17174208135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  C.cajan_47828 174 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 208
                    *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.1E-15168222IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-14169232No hitNo description
PROSITE profilePS5011411.108172204IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-13172206IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.41E-11173220No hitNo description
PfamPF003204.5E-15174208IPR000679Zinc finger, GATA-type
PROSITE patternPS003440174199IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDVCRNVSVS SECHQELPTL DDLFSHQNME VDLGMEWLSV FVEDCFSSRP SCLLAPPCVE  60
TTSTSTSTKP STTVQRPQQK PLQNFTVPGK ARSKRKRLSA PRTKDTLATW SQHHLSEGLS  120
SDPPLLKQAY WLADSELIVP KKKKKEEIVV RKEKLEDFFE GEVRNDEHPI PRRCTHCLAQ  180
RTPQWRAGPL GPKTLCNACG VRYKSGRLLP EYRPAKSPTF VSHLHSNSHK KVMEMRMGVP  240
SSTPADN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145PKKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_47828
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-90AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208257.10.0GATA transcription factor 5 isoform X1
TrEMBLA0A151QQM10.0A0A151QQM1_CAJCA; GATA transcription factor 11
STRINGXP_007151835.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-38GATA transcription factor 9