PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_48002
Common NameKK1_049870
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LSD
Protein Properties Length: 88aa    MW: 9655.32 Da    PI: 8.4974
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_48002genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD132.41.5e-10117925
        zf-LSD1  9 sYPrGApsVRCalCdtV 25
                   +YP+GApsV+Ca+C+++
  C.cajan_48002  1 MYPYGAPSVKCAICHFI 17
                   9**************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.1E-6119IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-8117IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MYPYGAPSVK CAICHFITNV TMTNERLRIP VLRSNGTVPS NSSSMPLSHT QTIIVQNPMT  60
VDSTGKLVFT IAFLFSLVLD PYLTGVCF
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_48002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020209634.11e-43protein LSD1, partial
SwissprotQ2QMB32e-16LOL2_ORYSJ; Protein LOL2
TrEMBLA0A151UGB11e-57A0A151UGB1_CAJCA; Uncharacterized protein
STRINGGLYMA15G22140.13e-27(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.73e-18LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]