PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g00710
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24407.8 Da    PI: 9.1706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g00710genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.5e-212877149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i n+  r+vtfskRr g++KKA+EL++LC+ae+a+i+ s ++++l+++
  CA00g00710 28 KPIANQNSRHVTFSKRRLGVFKKASELCILCGAEIAIIVQSlKRQRLFTF 77
                689*************************************9567889888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.9272068IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-242080IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-2421110IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-132242IPR002100Transcription factor, MADS-box
PfamPF003194.5E-203077IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-134257IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-135778IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MNANNTDTVD SSAVPVKKTQ GRRKIVIKPI ANQNSRHVTF SKRRLGVFKK ASELCILCGA  60
EIAIIVQSLK RQRLFTFGHP SVDVVIDRYL TGKSSSVNNH RFNFVQQNNE YYSQICRELD  120
AEKKNKEIID ESKMVNGNNN GFWWNESIDN MGIEELDKFV DALEELKKRV NMRVDVLSMI  180
KGSSSLPSTS TMNQAIDYCA SIVPFDFNYP GNAQF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566774.11e-143PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2X8P01e-159A0A2G2X8P0_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000637941e-105(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-35AGAMOUS-like 62