PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g06730
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 103aa    MW: 12134 Da    PI: 6.7922
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g06730genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.2e-1412821999
                -HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 19 pkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                p  f+ ++  g     +++ ++  + g++W vkl  ++++    +++GW++F+++++L+ gD+++F+++g+++f   v++f++
  CA00g06730 12 PIGFL-KYlkG-H--DHVEHVVLKRAGKKWLVKL--NGRR----FKDGWEKFAEEHDLQLGDMLIFRHEGDMDF--DVSIFDS 82
                55566.44332.2..4567788999*********..8887....9*****************************..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.153183IPR003340B3 DNA binding domain
SMARTSM010191.0E-6283IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-171089IPR015300DNA-binding pseudobarrel domain
CDDcd100178.50E-131181No hitNo description
PfamPF023623.0E-111182IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-172195IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MYHSCYVLQK VPIGFLKYLK GHDHVEHVVL KRAGKKWLVK LNGRRFKDGW EKFAEEHDLQ  60
LGDMLIFRHE GDMDFDVSIF DSTRCDTEYA EYLQEKKIGE LL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563098.16e-68PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A1U8G3451e-66A0A1U8G345_CAPAN; B3 domain-containing protein REM10-like
STRINGXP_009801950.16e-44(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-17B3 family protein