PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g16330
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 298aa    MW: 32814.3 Da    PI: 6.3725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g16330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.19.9e-161362255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                r +h+  E+rRR++iN++f++Lr l+P+     ++K + a+ L ++++Y+++Lq
  CA00g16330 13 RSKHSVTEQRRRSKINERFQTLRNLIPHT----DQKRDTASFLSEVIQYVQYLQ 62
                899*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-19983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-23983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.051161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-151366No hitNo description
PfamPF000103.5E-131362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-121767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
TEGKNSDKAN AIRSKHSVTE QRRRSKINER FQTLRNLIPH TDQKRDTASF LSEVIQYVQY  60
LQETVQKYEG SYQPWNSEPT KLMPWRNSHW RAHSFPATPQ ALRNSTDTGP TYSGRFDENL  120
LTDTSAMQAN QRNPLVSHPG GDVSYKSMDQ EKELVSRAIA TSIPLQASVP VPVQNDSAFS  180
DSLPTPASDE CPSTTNALNG QEFVIEGGTI SISSPYSPLL LSSFTQALET AGLDLSQATV  240
SVQINLGKQA FKGMSLGPSV AKDTENPPPP AGDQFVEKFQ DTNNGEELDR AQKRLKK*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-104HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547007.10.0PREDICTED: transcription factor BIM2-like isoform X3
SwissprotQ9CAA49e-83BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A1U8EIF60.0A0A1U8EIF6_CAPAN; transcription factor BIM2-like isoform X3
STRINGSolyc05g011810.2.11e-174(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-77BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]