PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g18810

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 103aa MW: 11804 Da PI: 10.6861

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g18810	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.6	7.8e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKK +ELSvLCda++ +iifs++gkl+eyss CA00g18810 9 KRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSTKGKLFEYSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.413	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.0E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-29	2	90	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.71E-37	2	59	No hit	No description
PRINTS	PR00404	1.4E-30	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.4E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-30	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MGRGKVEVKR IENKTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST KGKLFEYSSQ 60 PHRFVFSPSF SCFKNFWVLS KLNLVVDYFQ LIIMSFLCSF SL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	7e-19	1	59	1	59	MEF2C
5f28_B	7e-19	1	59	1	59	MEF2C
5f28_C	7e-19	1	59	1	59	MEF2C
5f28_D	7e-19	1	59	1	59	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212438	1e-73	AC212438.2 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence.
GenBank	HG975450	1e-73	HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBank	HG975523	1e-73	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785850.1	3e-37	PREDICTED: MADS-box protein FBP24 isoform X1
Refseq	XP_009785851.1	3e-37	PREDICTED: MADS-box protein FBP24 isoform X1
Refseq	XP_009785852.1	3e-37	PREDICTED: MADS-box protein FBP24 isoform X2
Refseq	XP_016434468.1	3e-37	PREDICTED: MADS-box protein FBP24-like
Refseq	XP_016571633.1	3e-37	PREDICTED: MADS-box protein FBP24
Refseq	XP_016571635.1	3e-37	PREDICTED: MADS-box protein FBP24
Refseq	XP_019262752.1	3e-37	PREDICTED: MADS-box protein FBP24
Refseq	XP_019262753.1	3e-37	PREDICTED: MADS-box protein FBP24
Swissprot	Q9ATE5	2e-36	FBP24_PETHY; MADS-box protein FBP24
TrEMBL	A0A1S3X444	7e-36	A0A1S3X444_TOBAC; MADS-box protein FBP24-like
TrEMBL	A0A1U7X127	7e-36	A0A1U7X127_NICSY; MADS-box protein FBP24 isoform X1
TrEMBL	A0A1U8GKF2	6e-36	A0A1U8GKF2_CAPAN; MADS-box protein FBP24
TrEMBL	A0A314L961	6e-36	A0A314L961_NICAT; Protein transparent testa 16
STRING	XP_009785850.1	1e-36	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	2e-29	MIKC_MADS family protein

Publications ? help Back to Top
Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG In vivo imaging of MADS-box transcription factor interactions. J. Exp. Bot., 2006. 57(1): p. 33-42 [PMID:16291798]