PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g25180
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARR-B
Protein Properties Length: 623aa    MW: 68751.2 Da    PI: 6.0798
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g25180genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.91.5e-25377432156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 
                 k +++WtpeLH++Fv+aveqL G+++A+P++il++mkv+gLt+++++SHLQ kYR++
  CA00g25180 377 KVKVDWTPELHKKFVQAVEQL-GIDQAIPSRILDVMKVEGLTRHNIASHLQqKYRMH 432
                 5689*****************.****************************549**86 PP
2Response_reg27.81.3e-10531601109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                   vl+ d++ + +  +++ lek +y +v ++ + +eal  +  k   +++ ++ +   g  dG+  l+ +++++ +lp i+ +   + +++ +++ +Ga
    CA00g25180  53 VLLLDEDSNSAAEMKSRLEKMDY-IVYTFCNESEALSAISSKSegFHVAIVEVVSAGdNDGV--LQFLESAK-NLPTIMTSNIHSLSTMMKCIALGA 145
                   799999999**************.***************777777*******8888867874..66676666.9*******9999************ PP

                   SEEEESS--HHHHHH CS
  Response_reg  95 kdflsKpfdpeelvk 109
                    +fl Kp + ++l +
    CA00g25180 146 VEFLQKPLSDDKLKN 160
                   ***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-1549173IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.6E-1549181No hitNo description
SMARTSM004481.1E-451162IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011022.43852166IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-753160IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.66E-954165No hitNo description
PROSITE profilePS5129413.419374435IPR017930Myb domain
SuperFamilySSF466895.73E-15375433IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-25375435IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-23377432IPR006447Myb domain, plants
PfamPF002493.7E-6380427IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MFAGRDGFVA VVVLMIGISG VVNGPGAGCN GREMICIEDE LLGWKDFPKG LKVLLLDEDS  60
NSAAEMKSRL EKMDYIVYTF CNESEALSAI SSKSEGFHVA IVEVVSAGDN DGVLQFLESA  120
KNLPTIMTSN IHSLSTMMKC IALGAVEFLQ KPLSDDKLKN IWQHVVHKAF NTRKDVSGPL  180
EPVKESLLSM LQLQPEKGEP DDKSSNGTEP LIAVADNNTE QSSGCDKYPA PSTPQLKQGV  240
RSVDDSDCHD HTIFSTDQDN GEHDGDTKSV ETTYNNSLAE NTVQISPPGQ QQDIILKEEN  300
GSSPHQTMEA DIATFSQIND CADNSDGSSP HQKTEADIAT TSSQSKDCPD NSISHSAEPS  360
KASGPHSSSG TKSNKKKVKV DWTPELHKKF VQAVEQLGID QAIPSRILDV MKVEGLTRHN  420
IASHLQQKYR MHRRQILPRE VERRWPHPQP RDSVQRNYYP HKPVMTFPPY HSNHVAPAGQ  480
CYPAWVPPAS YPNGLQVWGS PYYPGWQPAE TWHWKPHPGL LADTWGSPVM PPSFGSYPPY  540
PQNAGMYQSH GMHNRYSMLE KSFDVHPAEE VIDKVVKEAI TKPWLPLPLG LKPPSMEGVL  600
DELSRQGIST VPPRINGSRC WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-15375436363ARR10-B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1754450.0KC175445.1 Capsicum annuum APRR2-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571225.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_016571232.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
TrEMBLA0A1U8GJB00.0A0A1U8GJB0_CAPAN; two-component response regulator-like APRR2 isoform X1
STRINGSolyc08g077230.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-128ARR-B family protein