PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g25300
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 195aa    MW: 21254.2 Da    PI: 4.7105
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g25300genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-112565445
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     W ++E+ ll+++ +++G  +W+ +a+++g +++  qc++++ 
       CA00g25300 25 WNADEEMLLLEGLEMYGLANWAEVAEHVG-TKSKLQCIEHYK 65
                     *****************************.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.21E-131771IPR009057Homeodomain-like
PROSITE profilePS5129322.7932072IPR017884SANT domain
SMARTSM007177.3E-112170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-82467IPR009057Homeodomain-like
PfamPF002491.6E-112566IPR001005SANT/Myb domain
CDDcd001677.69E-64067No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSGICLKDSF YEQDNLSFPL ICADWNADEE MLLLEGLEMY GLANWAEVAE HVGTKSKLQC  60
IEHYKSIYIS SPCFPLPDMS HVMGKSREEL LAMAKEQGYA APGEVNVKEE SPFSARIKME  120
DQREENSAGL ASVGGSASGK LAGAGKRTSA VLNSKENHDS IKLEGISCSS FKSQKLVMLT  180
DCVLLLYHAF ECSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E2e-16178057120Transcriptional adapter 2
6cw3_G2e-16178057120Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0146080.0BT014608.1 Lycopersicon esculentum clone 134091F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580485.11e-104PREDICTED: transcriptional adapter ADA2 isoform X1
SwissprotQ75LL62e-53TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A1U8HAU71e-102A0A1U8HAU7_CAPAN; Transcriptional adapter
TrEMBLA0A2G2Z1X11e-102A0A2G2Z1X1_CAPAN; Transcriptional adapter
STRINGXP_009803647.14e-93(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24471215
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]