PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g29750
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21710.5 Da    PI: 5.3869
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g29750genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.51.5e-073481249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie +  r+ tfskR  g+ K  +EL    d++  +++ s+t+k y +
  CA00g29750 34 KIEKDVDRYSTFSKRCSGLYKEGSELVRENDVDLGIVLTSPTNKTYAF 81
                799*****************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.2412585IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-72584IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-1626114IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-72747IPR002100Transcription factor, MADS-box
PfamPF003197.2E-123481IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-74762IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-76283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MYINIHHISL FFVSHIAFME RKKTAGRRKI PLEKIEKDVD RYSTFSKRCS GLYKEGSELV  60
RENDVDLGIV LTSPTNKTYA FVHPTSNAVI DHFDDQIIAE NSRNKVNQLN DRLNELDERE  120
EIAKEKLLAL NEMNKTREKN RWEFIDQLNA NEIIKFQAWL DVGEFLLKDQ LPEASSSSQS  180
PPEDANI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553678.11e-108PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2Y2311e-135A0A2G2Y231_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000878132e-60(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.12e-19AGAMOUS-like 28