PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g29760
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20358 Da    PI: 7.5138
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g29760genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF368.9e-121663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +i+n+ nr+ tfskR  g+ KKA+EL    d++  +++ s+t+k y +
  CA00g29760 16 KIKNDANRYSTFSKRCSGLYKKASELVRENDVDLGIVLTSPTDKTYAF 63
                59******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-13766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.222767IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-19879IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-9929IPR002100Transcription factor, MADS-box
PfamPF003194.1E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-92944IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-94465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MERKKTAGRR KIPLVKIKND ANRYSTFSKR CSGLYKKASE LVRENDVDLG IVLTSPTDKT  60
YAFVHPTSNA VIDRFMNLKT DFDDQIIAEN SRNKVNQLND RLNELDEREE IAKEKLLALN  120
EMNKTREKNR WESIDQLNAN EIIKFQTWLD VGEFMLKHQL PEASSSSQSP PEDANI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553678.11e-128PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U8F2K01e-126A0A1U8F2K0_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Y1L61e-126A0A2G2Y1L6_CAPAN; agamous-like MADS-box protein AGL62
STRINGPGSC0003DMT4000878133e-61(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-22AGAMOUS-like 62