PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g29780
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20352.2 Da    PI: 9.3194
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g29780genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.39.9e-091663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie +  r+ tfskR  g+ KKA+EL     ++  +++ s+t+k y +
  CA00g29780 16 KIEKDAYRYSTFSKRCSGLYKKASELVRENYVDLGIVLTSPTDKTYAF 63
                5899999*******************9888888888888888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.414767IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-8766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-16878IPR002100Transcription factor, MADS-box
PfamPF003191.3E-121663IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEHKKTAGRR KIPLVKIEKD AYRYSTFSKR CSGLYKKASE LVRENYVDLG IVLTSPTDKT  60
YAFVHPTSTA IIDRFMNLKT DFGDQIVAEN SRNKVNQLND RLNELDKRGK IAKERLLALN  120
EMNKNREKNR WEFIDQLNAD EIMKFQAWLD VGEVMLKDQL PEASSSLQSP PEDANI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553677.11e-119PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G2Y1J91e-128A0A2G2Y1J9_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000878133e-61(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-20AGAMOUS-like 61